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The following variables were set, to use during the installation:
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APP_NAME : fermitools
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APP_VER : 2.0.8
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APP_REQUIRED : gcc/9.3.0 conda/3_gcc_9.3.0
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APP_COMPILER : gcc
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APP_DEST_DIR : /soft/sl7/gen5-mic/fermitools
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APP_DEST : /soft/sl7/gen5-mic/fermitools/2.0.8_gcc_9.3.0
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APP_TMP : /scratch/vanecka/build/sl7/gen5-mic/fermitools/2.0.8_gcc_9.3.0
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Source Code:
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APP_SRC : /installs/fermitools/2.0.8/src/Quickstart-Guide [ [32mExists[m ]
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APP_SRC_DIR : /installs/fermitools/2.0.8/src
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APP_SRC_FILE : Quickstart-Guide
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APP_SRC_HTTP : https://github.com/fermi-lat/Fermitools-conda/wiki/Quickstart-Guide
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Module File:
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APP_MODULE : /soft/sl7/gen5-mic/modules/physical-sciences/fermitools/2.0.8_gcc_9.3.0
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APP_DISPLAYNAME : Fermitools
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APP_SHORTNAME : FERMITOOLS
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RedMine variables:
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APP_PROJECT_ID : 434
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Execute "Variables", to see the values of the variables again.
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Opening a ticket for the project.
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(base) [vanecka@node0517 ~]$
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(base) [vanecka@node0517 ~]$ #Redirect Standard out and Std Error to a logfile:
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(base) [vanecka@node0517 ~]$ module purge &>/dev/null
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(base) [vanecka@node0517 ~]$ module load hpc &>/dev/null
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(base) [vanecka@node0517 ~]$
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(base) [vanecka@node0517 ~]$ for module in $(echo $APP_REQUIRED); do
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> module load $module &>/dev/null || exit 1
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> done
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(base) [vanecka@node0517 ~]$ for module in $(echo $APP_REQUIRED); do module load $module &>/dev/null || exit 1; done
[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[C[K[ -e $APP_TMP ] || mkdir -p $APP_TMP
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(base) [vanecka@node0517 ~]$ cd $APP_TMP
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(base) [vanecka@node0517 2.0.8_gcc_9.3.0]$ cat > $APP_TMP/run_root <<EOF
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> #!/bin/bash
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>
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> export APP_DEST=$APP_DEST
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>
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> module purge &>/dev/null
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> module load hpc &>/dev/null
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>
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> [ -e \$APP_DEST ] && sudo /bin/rm -rf \$APP_DEST
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>
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> #Install Anaconda First:
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> sudo bash $CONDA_INSTALLER -b -f -p \$APP_DEST
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>
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> #source $ANACONDA_INIT
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> for module in \$(echo "$APP_REQUIRED"); do
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> module load \$module &>/dev/null || exit 1
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> done
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>
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> export CONDA_PYTHON_DIR=\$APP_DEST/lib/python${PYTHON_RELEASE}
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> export CONDA_ENVS_PATH=\$CONDA_PYTHON_DIR/envs
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> export CONDA_PKGS_DIRS=\$CONDA_PYTHON_DIR/site-packages
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>
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> conda create -y -n fermi_${APP_VER} -c conda-forge -c fermi fermitools python=3 clhep=2.4.4.1
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> EOF
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(base) [vanecka@node0517 2.0.8_gcc_9.3.0]$ export APP_DEST=/soft/sl7/gen5-mic/fermitools/2.0.8_gcc_9.3.0
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(base) [vanecka@node0517 2.0.8_gcc_9.3.0]$
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(base) [vanecka@node0517 2.0.8_gcc_9.3.0]$ module purge &>/dev/null
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(base) [vanecka@node0517 2.0.8_gcc_9.3.0]$ module load hpc &>/dev/null
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(base) [vanecka@node0517 2.0.8_gcc_9.3.0]$ sudo su -
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PREFIX=/soft/sl7/gen5-mic/fermitools/2.0.8_gcc_9.3.0
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Unpacking payload ...
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0%| | 0/36 [00:00<?, ?it/s]
Extracting : python-3.7.9-h7579374_0.conda: 0%| | 0/36 [00:17<?, ?it/s]
Extracting : python-3.7.9-h7579374_0.conda: 3%|▎ | 1/36 [00:17<10:23, 17.80s/it]
Extracting : _libgcc_mutex-0.1-main.conda: 3%|▎ | 1/36 [00:17<10:23, 17.80s/it]
Extracting : ca-certificates-2020.10.14-0.conda: 6%|▌ | 2/36 [00:17<10:05, 17.80s/it]
Extracting : ld_impl_linux-64-2.33.1-h53a641e_7.conda: 8%|▊ | 3/36 [00:17<09:47, 17.80s/it]
Extracting : libstdcxx-ng-9.1.0-hdf63c60_0.conda: 11%|█ | 4/36 [00:17<09:29, 17.80s/it]
Extracting : libgcc-ng-9.1.0-hdf63c60_0.conda: 14%|█▍ | 5/36 [00:17<09:11, 17.80s/it]
Extracting : libffi-3.3-he6710b0_2.conda: 17%|█▋ | 6/36 [00:17<08:54, 17.80s/it]
Extracting : ncurses-6.2-he6710b0_1.conda: 19%|█▉ | 7/36 [00:17<08:36, 17.80s/it]
Extracting : openssl-1.1.1h-h7b6447c_0.conda: 22%|██▏ | 8/36 [00:17<08:18, 17.80s/it]
Extracting : xz-5.2.5-h7b6447c_0.conda: 25%|██▌ | 9/36 [00:17<08:00, 17.80s/it]
Extracting : yaml-0.2.5-h7b6447c_0.conda: 28%|██▊ | 10/36 [00:17<07:42, 17.80s/it]
Extracting : zlib-1.2.11-h7b6447c_3.conda: 31%|███ | 11/36 [00:17<07:25, 17.80s/it]
Extracting : libedit-3.1.20191231-h14c3975_1.conda: 33%|███▎ | 12/36 [00:17<07:07, 17.80s/it]
Extracting : readline-8.0-h7b6447c_0.conda: 36%|███▌ | 13/36 [00:17<06:49, 17.80s/it]
Extracting : tk-8.6.10-hbc83047_0.conda: 39%|███▉ | 14/36 [00:17<06:31, 17.80s/it]
Extracting : sqlite-3.33.0-h62c20be_0.conda: 42%|████▏ | 15/36 [00:17<06:13, 17.80s/it]
Extracting : certifi-2020.6.20-pyhd3eb1b0_3.conda: 44%|████▍ | 16/36 [00:17<05:56, 17.80s/it]
Extracting : chardet-3.0.4-py37h06a4308_1003.conda: 47%|████▋ | 17/36 [00:17<05:38, 17.80s/it]
Extracting : idna-2.10-py_0.conda: 50%|█████ | 18/36 [00:17<05:20, 17.80s/it]
Extracting : pycosat-0.6.3-py37h27cfd23_0.conda: 53%|█████▎ | 19/36 [00:17<05:02, 17.80s/it]
Extracting : pycparser-2.20-py_2.conda: 56%|█████▌ | 20/36 [00:17<04:44, 17.80s/it]
Extracting : pysocks-1.7.1-py37_1.conda: 58%|█████▊ | 21/36 [00:17<04:27, 17.80s/it]
Extracting : ruamel_yaml-0.15.87-py37h7b6447c_1.conda: 61%|██████ | 22/36 [00:17<04:09, 17.80s/it]
Extracting : six-1.15.0-py37h06a4308_0.conda: 64%|██████▍ | 23/36 [00:17<03:51, 17.80s/it]
Extracting : tqdm-4.51.0-pyhd3eb1b0_0.conda: 67%|██████▋ | 24/36 [00:17<03:33, 17.80s/it]
Extracting : wheel-0.35.1-pyhd3eb1b0_0.conda: 69%|██████▉ | 25/36 [00:17<03:15, 17.80s/it]
Extracting : cffi-1.14.3-py37h261ae71_2.conda: 72%|███████▏ | 26/36 [00:17<02:58, 17.80s/it]
Extracting : conda-package-handling-1.7.2-py37h03888b9_0.conda: 75%|███████▌ | 27/36 [00:17<02:40, 17.80s/it]
Extracting : setuptools-50.3.1-py37h06a4308_1.conda: 78%|███████▊ | 28/36 [00:17<02:22, 17.80s/it]
Extracting : brotlipy-0.7.0-py37h27cfd23_1003.conda: 81%|████████ | 29/36 [00:17<02:04, 17.80s/it]
Extracting : cryptography-3.2.1-py37h3c74f83_1.conda: 83%|████████▎ | 30/36 [00:17<01:46, 17.80s/it]
Extracting : pip-20.2.4-py37h06a4308_0.conda: 86%|████████▌ | 31/36 [00:17<01:29, 17.80s/it]
Extracting : pyopenssl-19.1.0-pyhd3eb1b0_1.conda: 89%|████████▉ | 32/36 [00:17<01:11, 17.80s/it]
Extracting : urllib3-1.25.11-py_0.conda: 92%|█████████▏| 33/36 [00:17<00:53, 17.80s/it]
Extracting : requests-2.24.0-py_0.conda: 94%|█████████▍| 34/36 [00:17<00:35, 17.80s/it]
Extracting : conda-4.9.2-py37h06a4308_0.conda: 97%|█████████▋| 35/36 [00:17<00:17, 17.80s/it]
Collecting package metadata (current_repodata.json): ...working... done
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Solving environment: ...working... done
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## Package Plan ##
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environment location: /soft/sl7/gen5-mic/fermitools/2.0.8_gcc_9.3.0
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added / updated specs:
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76
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- _libgcc_mutex==0.1=main
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77
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- brotlipy==0.7.0=py37h27cfd23_1003
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78
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- ca-certificates==2020.10.14=0
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79
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- certifi==2020.6.20=pyhd3eb1b0_3
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80
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- cffi==1.14.3=py37h261ae71_2
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81
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- chardet==3.0.4=py37h06a4308_1003
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82
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- conda-package-handling==1.7.2=py37h03888b9_0
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- conda==4.9.2=py37h06a4308_0
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84
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- cryptography==3.2.1=py37h3c74f83_1
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85
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- idna==2.10=py_0
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86
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- ld_impl_linux-64==2.33.1=h53a641e_7
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87
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- libedit==3.1.20191231=h14c3975_1
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88
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- libffi==3.3=he6710b0_2
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89
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- libgcc-ng==9.1.0=hdf63c60_0
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90
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- libstdcxx-ng==9.1.0=hdf63c60_0
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91
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- ncurses==6.2=he6710b0_1
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92
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- openssl==1.1.1h=h7b6447c_0
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93
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- pip==20.2.4=py37h06a4308_0
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94
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- pycosat==0.6.3=py37h27cfd23_0
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95
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- pycparser==2.20=py_2
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96
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- pyopenssl==19.1.0=pyhd3eb1b0_1
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97
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- pysocks==1.7.1=py37_1
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98
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- python==3.7.9=h7579374_0
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99
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- readline==8.0=h7b6447c_0
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100
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- requests==2.24.0=py_0
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101
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- ruamel_yaml==0.15.87=py37h7b6447c_1
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102
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- setuptools==50.3.1=py37h06a4308_1
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103
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- six==1.15.0=py37h06a4308_0
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104
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- sqlite==3.33.0=h62c20be_0
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105
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- tk==8.6.10=hbc83047_0
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106
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- tqdm==4.51.0=pyhd3eb1b0_0
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107
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- urllib3==1.25.11=py_0
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108
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- wheel==0.35.1=pyhd3eb1b0_0
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109
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- xz==5.2.5=h7b6447c_0
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110
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- yaml==0.2.5=h7b6447c_0
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111
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- zlib==1.2.11=h7b6447c_3
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112
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113
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The following NEW packages will be INSTALLED:
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_libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main
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117
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brotlipy pkgs/main/linux-64::brotlipy-0.7.0-py37h27cfd23_1003
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118
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ca-certificates pkgs/main/linux-64::ca-certificates-2020.10.14-0
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119
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certifi pkgs/main/noarch::certifi-2020.6.20-pyhd3eb1b0_3
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120
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cffi pkgs/main/linux-64::cffi-1.14.3-py37h261ae71_2
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121
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chardet pkgs/main/linux-64::chardet-3.0.4-py37h06a4308_1003
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122
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conda pkgs/main/linux-64::conda-4.9.2-py37h06a4308_0
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123
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conda-package-han~ pkgs/main/linux-64::conda-package-handling-1.7.2-py37h03888b9_0
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124
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cryptography pkgs/main/linux-64::cryptography-3.2.1-py37h3c74f83_1
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125
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idna pkgs/main/noarch::idna-2.10-py_0
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126
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ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.33.1-h53a641e_7
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127
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libedit pkgs/main/linux-64::libedit-3.1.20191231-h14c3975_1
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128
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libffi pkgs/main/linux-64::libffi-3.3-he6710b0_2
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129
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libgcc-ng pkgs/main/linux-64::libgcc-ng-9.1.0-hdf63c60_0
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130
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libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0
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131
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ncurses pkgs/main/linux-64::ncurses-6.2-he6710b0_1
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132
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openssl pkgs/main/linux-64::openssl-1.1.1h-h7b6447c_0
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133
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pip pkgs/main/linux-64::pip-20.2.4-py37h06a4308_0
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134
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pycosat pkgs/main/linux-64::pycosat-0.6.3-py37h27cfd23_0
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135
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pycparser pkgs/main/noarch::pycparser-2.20-py_2
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136
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pyopenssl pkgs/main/noarch::pyopenssl-19.1.0-pyhd3eb1b0_1
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137
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pysocks pkgs/main/linux-64::pysocks-1.7.1-py37_1
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138
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python pkgs/main/linux-64::python-3.7.9-h7579374_0
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139
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readline pkgs/main/linux-64::readline-8.0-h7b6447c_0
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140
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requests pkgs/main/noarch::requests-2.24.0-py_0
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141
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ruamel_yaml pkgs/main/linux-64::ruamel_yaml-0.15.87-py37h7b6447c_1
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142
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setuptools pkgs/main/linux-64::setuptools-50.3.1-py37h06a4308_1
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143
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six pkgs/main/linux-64::six-1.15.0-py37h06a4308_0
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144
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sqlite pkgs/main/linux-64::sqlite-3.33.0-h62c20be_0
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145
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tk pkgs/main/linux-64::tk-8.6.10-hbc83047_0
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146
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tqdm pkgs/main/noarch::tqdm-4.51.0-pyhd3eb1b0_0
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147
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urllib3 pkgs/main/noarch::urllib3-1.25.11-py_0
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148
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wheel pkgs/main/noarch::wheel-0.35.1-pyhd3eb1b0_0
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149
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xz pkgs/main/linux-64::xz-5.2.5-h7b6447c_0
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150
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yaml pkgs/main/linux-64::yaml-0.2.5-h7b6447c_0
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151
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zlib pkgs/main/linux-64::zlib-1.2.11-h7b6447c_3
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152
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153
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Preparing transaction: ...working... done
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Executing transaction: ...working... done
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156
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installation finished.
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157
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Collecting package metadata (current_repodata.json): ...working... done
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