Projects - HPC Operations

Projects

Centre for Digital Futures
- cloudstack
- vScaler POC
Training
post-install
puppet
- common
  - modules
  - sites
- modules
  - aide
  - apparmor
  - aptutils
  - auditd
  - bacula
  - bind
  - chkrootkit
  - clamav
  - cmake
  - consul
  - curl
  - dhcp
  - dovecot
  - etherpad
  - fpm
  - gcc
  - gerrit
  - git
  - gnupg
  - guacamole
  - guestfish
  - gzip
  - haproxy
  - hugepages
  - iptables
  - irods
  - java
  - keepalived
  - lftp
  - libvirt
  - lizardfs
  - lldpd
  - lynis
  - mailx
  - mc
  - mirror
  - mysql
  - netbox
  - nfs
  - nginx
  - nodejs
  - ntp
  - numa
  - openldap
  - os
  - ovs
  - owncloud
  - php
  - phpldapadmin
  - pkg_config
  - pmacct
  - postfix
  - postgresql
  - profile
  - prometheus
  - puppet
  - pureftpd
  - python
  - redis
  - redmine
  - rng_tools
  - rsync
  - ruby
  - rundeck
  - samba
  - sasl
  - ssh
  - sudo
  - sysctl
  - vault
  - vim
  - wget
  - yumutils
  - zfs
- sites
  - core.devint
Software
- build-env
  - aide
  - bacula
  - chkrootkit
  - consul
  - consul-template
  - fpm
  - freeradius
  - gerrit
  - git-lfs
  - guacamole
  - haproxy
  - hpc_blast
    BLAST database management tools for the UFS HPC
  - jenkins
  - jenkins-cli
  - keepalived
  - lldpd
  - lynis
  - midpoint
  - mirror
  - moodle
  - nginx
  - openldap
  - ovs
  - owncloud
  - phpldapadmin
  - pmacct
  - prometheus
  - quagga
  - redis
  - rundeck
  - rundeck-cli
  - singularity
  - vault
  - znapzend
- cluster
  - 01_template
  - abyss
  - admixture
  - adol-c
  - ambertools
  - ams
    Formerly known as ADF
  - anaconda
  - anaconda2
  - anaconda3
  - aragorn
  - arlequin
  - atlas
  - augustus
  - autoconf
  - autofs
  - automake
  - aws
  - bambamc
  - bamm
  - bamtools
  - barrnap
  - bazel
  - bbmap
  - bcftools
  - beagle-lib
  - beast
  - bedtools
  - bind
  - binutils
  - bios
  - bismark
  - bison
  - blas
  - blast
  - blat
  - blender
  - blupf90
  - boinc
  - bond
  - boost
  - bowtie
  - breast_victre
  - bwa
  - bzip2
  - cap3
  - ccp4
  - cdbfasta
  - cfitsio
  - checkm
  - chombo
  - clhep
  - clustalo
  - clustalw
  - cmake
  - code
  - container
  - coot
  - cuda
  - cudnn
  - cufflinks
  - curl
  - dcmtk
  - devstack
  - diamond
  - dot_net
  - ds9
  - dssp2
  - edirect
  - egsnrc
  - elrepo
  - emmax
  - endog
  - environmental_modules
  - examl
  - exonerate
  - fastqc
  - fasttree
  - fastx_toolkit
  - fermitools
  - fftw
  - fftw2
  - figtree
  - flex
  - gabedit
  - gamess
  - ganglia
  - garli
  - gaussian
  - gblocks
  - gcc
  - gcta
  - gdal
  - gdbm
  - geant
  - genomethreader
  - geos
  - git-lfs
  - glibc
  - gmap
  - gmp
  - gnome-tune
  - grace
  - grads
  - grass
  - gromacs
  - gsl
  - gubbins
  - hardening
  - hdf5
  - healpix
  - heasoft
  - help2man
  - hga
  - hisat2
  - hmmer
  - hpl
  - htslib
  - hyperion
  - idba
  - idl
  - igv
  - imagej
  - infernal
  - intel
  - ipmi
  - iqtree
  - isl
  - itk
  - itksnap
  - java
  - jellyfish
  - jmodeltest
  - kallisto
  - kmc
  - kmergenie
  - lamp
  - lapack
  - legacy
  - libgeotiff
  - libgtextutils
  - libssh2
  - lldp
  - lundadose
  - mafft
  - mailman
  - make
  - mascot
  - maui
  - mcl
  - meme-suite
  - metabat
  - metaeuk
  - metashape
  - meta-utils
  - minced
  - minia
  - misa
  - mmdb
  - mmdb2
  - Modeller
  - modules
  - mpc
  - mpfr
  - mpss
  - mrbayes
  - mummer
  - munin
  - muscle
  - nbo
  - ncl
  - ncurses
  - netcdf
  - nfs
  - nlopt
  - nlr-parser
  - nss
  - ntopng
  - nvme
  - octave
  - onnx
  - opa
  - openfoam
  - openimpi
  - openldap
  - openmpi
  - openssl
  - orca
  - orffinder
  - orfpredictor
  - paml
  - pcre
  - pcre2
  - perl
  - pgi
  - phenix
  - photoscan
  - phyloflash
  - phyml
  - pilon
  - plink
  - pluto
  - pplacer
  - priam
  - prinseq
  - prodigal
  - proj
  - python
  - qd
  - qe
  - qtiplot
  - qtsdk
  - quast
  - R
  - racon
  - rapidnj
  - raxml
  - raxml-nj
  - readline
  - repdenovo
  - rnammer
  - rnaquast
  - root
  - rosetta
  - rpy2
  - rsem
  - rstudio
  - salmon
  - samsa2
  - samtools
  - sas
  - scons
  - seaview
  - seqmonk
  - signalp
  - simind
  - sl
  - smalt
  - snep
  - soapdenovo
  - som_pak
  - sortmerna
  - spades
  - spark
  - sparsehash
  - sqlite
  - src
  - ssm
  - sssd
  - stan
  - star
  - starlink
  - stringtie
  - strviper
  - subread
  - subunit
  - supermicro
  - survival_kit
  - survival-kit
  - sysimage
  - tassel
  - tempest
  - tensorflow
  - tensorflow_gpu
  - texinfo
  - tmhmm
  - tophat
  - torque
  - tracer
  - transdecoder
  - transrate
  - treepl
  - treesub
  - trf
  - trimmomatic
  - trinityrnaseq
  - ucsc
    UCSC Kent Utilities
  - umass
  - unicycler
  - usbip
  - vasp
  - vcftools
  - velvet
  - visit
  - vsearch
  - vtk
  - wine
  - wombat
  - xz
  - zlib
- containers
- Documentation
  - hpc_use_documentation
    User documentation for the use of the HPC and its software
- Research

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